Table 5 AUROC and AUPR comparision for temporal holdout validation
From: GNE: a deep learning framework for gene network inference by aggregating biological information
| Methods | Yeast | E. coli | ||
|---|---|---|---|---|
| AUROC | AUPR | AUROC | AUPR | |
| LINE | 0.620 | 0.611 | 0.569 | 0.598 |
| node2vec | 0.640 | 0.609 | 0.587 | 0.599 |
| GNE (our model) | 0.710 | 0.683 | 0.653 | 0.658 |