Transcriptomic and metabolic flux analyses reveal shift of metabolic patterns during rice grain development

BMC Systems Biology

Table 1 Overview of the sequencing and mapping of transcriptome data of different rice tissues

Stage	Tissue	RawData(bp)	RawData (number)	CleanData (number)	Mapped reads(number)	Mapping rate
Booting stage	leaves	4,392,290,250	35,138,322	26,531,310	24,899,774	93.9%
	sheath	5,873,023,000	46,984,184	36,659,446	34,301,867	93.6%
	stamen	6,059,084,500	48,472,676	38,746,796	36,425,576	94.0%
	pistil	4,348,780,750	34,790,246	26,154,367	24,861,601	95.1%
	lemma & palea	4,673,388,000	37,387,104	30,018,313	28,174,883	93.9%
Mature grain stage	embryo	4,524,559,250	36,196,474	30,212,929	27,930,200	92.4%
	endosperm	4,892,736,750	39,141,894	27,017,181	25,101,827	92.9%
	lemma & palea	5,028,140,000	40,225,120	29,610,747	27,684,908	93.5%

ISSN: 1752-0509